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慢性阻塞性肺疾病与脓毒症之间常见诊断生物标志物及治疗靶点的识别:一种生物信息学和机器学习方法
Authors Li X, Xiao Y , Yang M , Zhang X, Yuan Z, Zhang Z, Zhang H, Liu L , Zhao M
Received 7 December 2024
Accepted for publication 20 May 2025
Published 28 May 2025 Volume 2025:20 Pages 1761—1786
DOI http://doi.org/10.2147/COPD.S510846
Checked for plagiarism Yes
Review by Single anonymous peer review
Peer reviewer comments 2
Editor who approved publication: Dr Richard Russell
Xinyi Li,1,* Yuyang Xiao,1,* Meng Yang,1 Xupeng Zhang,1 Zhangchi Yuan,1 Zaiqiu Zhang,1 Hanyong Zhang,2 Lin Liu,1 Mingyi Zhao1
1Department of Pediatrics, The Third Xiangya Hospital of Central South University, Changsha, Hunan, 410013, People’s Republic of China; 2Development of Novel Pharmaceutical Preparations, Changsha Medical University, Changsha, 410219, People’s Republic of China
*These authors contributed equally to this work
Correspondence: Mingyi Zhao, Department of Pediatrics, Third Xiangya Hospital of Central South University, Changsha, Hunan, 410013, People’s Republic of China, Email zhao_mingyi@csu.edu.cn Lin Liu, Department of Pediatrics, Third Xiangya Hospital of Central South University, Changsha, Hunan, 410013, People’s Republic of China, Email liulin602243@csu.edu.cn
Background: Evidence suggests a bidirectional association between chronic obstructive pulmonary disease (COPD) and sepsis, but the underlying mechanisms remain unclear. This study aimed to explore shared diagnostic genes, potential mechanisms, and the role of immune cells in the COPD-sepsis relationship using Mendelian randomization (MR) and bioinformatics approaches, while also identifying potential therapeutic drugs.
Methods: Two-sample MR analysis was performed using genome-wide association data to assess genetically predicted COPD and sepsis. Immune cell-mediated effects were quantified using a two-way two-sample MR analysis. Differential expression gene (DEG) analysis and weighted gene co-expression network analysis (WGCNA) were used to identify common genes. Functional enrichment analyses were conducted to explore the biological roles of these genes. LASSO and SVM-RFE algorithms identified shared diagnostic genes, which were evaluated using receiver operating characteristic (ROC) curves. Immune cell infiltration was analyzed with CIBERSORT, while transcription factor (TF) and miRNA networks were constructed using NetworkAnalyst. Drug predictions were made using DSigDB, and molecular docking validated potential drugs.
Results: Three immune cell types were identified as mediators between COPD and sepsis, with genetically predicted effects mediated by these cells at rates of 6.5%, 12.8%, and 3.9%. A total of 33 overlapping genes were identified, and AIM2 and RNF125 were highlighted as key diagnostic genes. Immune infiltration analysis revealed dysregulated monocyte, macrophage, plasma, and dendritic cells. Regulatory network analysis identified nine key co-regulators. Ten potential drug targets were identified, with seven validated via molecular docking.
Conclusion: AIM2 and RNF125 may serve as diagnostic biomarkers, and identified immune cell subsets could mediate the COPD-sepsis connection, offering insights into potential therapeutic targets.
Keywords: Mendelian randomization, comprehensive bioinformatics analysis, machine learning, molecular docking, chronic obstructive pulmonary disease, sepsis, immune cells, co-diagnostic genes, predictive drugs